Get SMARTER Datasets — get_smarter

Fetch SMARTER REST API datasets endpoint and returns results in a dataframe.

Usage

get_smarter_datasets(query = list())

Arguments

query: a list of query arguments

Value

Returns a dataframe with selected datasets

Passing additional parameters

Datasets endpoint supports additional parameters when making queries. Additional parameters need to be passed as list using the query parameter. For example, to get all the "Sheep" datasets you need to provide list(species="Sheep") as query parameter. Endpoint supports query by type and chip_name. In addition, you can search using a pattern in file contents through the search parameter. See Swagger Datasets endpoint for more information about the datasets endpoint

Examples

genotypes_foreground <- get_smarter_datasets(
  query = list(type = "foreground", type = "genotypes")
)

adaptmap_genotypes <- get_smarter_datasets(
  query = list(species = "Goat", search = "adaptmap", type = "genotypes")
)
if (FALSE) {

all_datasets <- get_smarter_datasets()
}